miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|204134123|gb|FD308812.1|FD308812 CCCAAATTCAACGTGGACGAGGTGCCCAACATCCTGCCCAGCGACTTGCCTCAGCCTCCACAGACGGAGAAACTCACCAC
TGCTCAGGAAGTGTTGGACAGAGCTCGCACCCTCATGACCCCTAAGATGGAGAAGGCTTTGGCTAACATGGCCTTAAAAA
CAGCAGAGGCAGCTTGTTCAAAAGCGAGCGAGACACCAGTAAAACCAGCTGTGATGCCCATCCAGACCTCCAGTGCCCTC
AAAGGAGTGTCCCAGTCTCTGCTGGAGAGGATCCGAGCTAAAGAGGCTCAGAAACTGCAAGCAGCAATGACGCGGAATCC
CGAACAGGAAGCGCGTCTGGGGATGATGTCACGCCTGCCAGAGATGGCCAGGATTCTGAGAAATGTCTTCATATCAGAGA
AGAAGCCAGCCTTGATCATGGAGCTGGCCTGTAATCGCATGATCGCCAGCTATCGCTCTTCTCTCAGTGCAGGGGAAATG
GAGAAACACATCCGTTTGCTGGTGGAGTTGGCTCCAGAGTGGCTCACGCTGCATCCCATCAGAAAGGATTTTTACCTCAA
GCTGAACAAGAACACTAACATGAACCTGGTTTTGGAGAAACTGAATCAGAAGATGAAGGAAGAGGAGCGACTCTGAGCGT
GTGCGTATGTTGGACTTGTTGGAATGACGTGCAATATTTTTAATCTTTGGACTGTGACTTTCTCCAGACACTGGTCTGTG
ACAGGAATGTT




Most similar to sp|Q9I9A7|CDT1_XENLA

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9I9A7|CDT1_XENLA DNA replication factor Cdt1 OS=Xenopus laevis
            GN=cdt1 PE=1 SV=2
          Length = 617

 Score =  273 bits (698), Expect = 9e-73
 Identities = 140/212 (66%), Positives = 174/212 (82%), Gaps = 1/212 (0%)
 Frame = +1

Query: 1    PKFNVDEVPNILPSDLPQPPQTEKLTTAQEVLDRARTLMTPKMEKALANMALKTAE-AAC 177
            P+FNVDEV ++ P++LP PPQ E+LTTAQEVL +AR L+TPKMEKALAN+ALKTAE A  
Sbjct: 406  PRFNVDEVLDVTPAELPLPPQVERLTTAQEVLSKARGLITPKMEKALANLALKTAENAGE 465

Query: 178  SKASETPVKPAVMPIQTSSALKGVSQSLLERIRAKEAQKLQAAMTRNPEQEARLGMMSRL 357
            +K   T    +     TS+ALKGVSQSLLERIRAKEAQKLQA MTR P+QE RL MMSRL
Sbjct: 466  TKNVSTEETKSTATTSTSTALKGVSQSLLERIRAKEAQKLQAIMTRRPQQEERLLMMSRL 525

Query: 358  PEMARILRNVFISEKKPALIMELACNRMIASYRSSLSAGEMEKHIRLLVELAPEWLTLHP 537
            PE+ARILRNVF++EKKPAL +E+ C+R+IAS RSS+S GEMEKH+ LL E+ P+WL++HP
Sbjct: 526  PELARILRNVFVAEKKPALTLEVTCSRVIASCRSSMSPGEMEKHLALLSEILPDWLSIHP 585

Query: 538  IRKDFYLKLNKNTNMNLVLEKLNQKMKEEERL 633
            +RKD Y KLN++ ++NL+LE+L +K KEEE L
Sbjct: 586  VRKDTYYKLNQSMDLNLILERLAKKTKEEESL 617